{
    "bcoid": "GLY_000267",
    "title": "Rat Gene Locus (Ensembl)",
    "description": "The Rat Gene Locus (Ensembl) contains Rattus norvegicus [taxid:10116] UniProtKB canonical accessions ...",
    "filename_list": "rat_protein_genelocus.csv",
    "filename": "rat_protein_genelocus.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Gene Coordinates"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "locus"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9Z214-1...",
                "Homer1..."
            ],
            [
                "P31424-1...",
                "Grm5..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "ensembl_gene_id"
                },
                {
                    "type": "string",
                    "label": "chromosome_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "strand"
                }
            ],
            [
                "Q9Z214-1",
                "Homer1",
                "ENSRNOG00000047014",
                "2",
                "24543093",
                "24644785",
                "0"
            ],
            [
                "P31424-1",
                "Grm5",
                "ENSRNOG00000016429",
                "1",
                "141312368",
                "141882274",
                "0"
            ]
        ]
    },
    "readme": "Name\n   - Rat Gene Locus (Ensembl)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-09-06T14:06:38.993695\n\nModified on\n   - 2024-05-17T11:23:54.340Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Gene Locus (Ensembl) contains Rattus norvegicus [taxid:10116] UniProtKB canonical accessions mapped to the corresponding ENSEMBL Gene ID, chromosome ID along with the gene's start and end position on the chromosome. The dataset is contributed by EMBL-EBI-UniProtKB and processed by GlyGen. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - gene coordinates\n   - start position\n   - end position\n   - Ensembl\n   - strand\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are mapped to ENSEMBL Gene identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_masterlist.csv\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_genelocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_genelocus.csv\n      Name: rat_protein_genelocus.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_genelocus.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"18704\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_protein_genelocus.csv"
}