{
    "bcoid": "GLY_000256",
    "title": "Human Protein Citations (RefSeq)",
    "description": "The Human Protein Citations (RefSeq) datasets contains Homo sapiens [taxid:9606] UniProtKB accessions ...",
    "filename_list": "human_protein_citations_refseq.csv",
    "filename": "human_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "O15439-1...",
                "ABCC4 impact..."
            ],
            [
                "P20941-1...",
                "Phosducin rs..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "O15439-1",
                "ABCC4 impacts megakaryopoiesis and protects megakaryocytes against 6-mercaptopurine induced cytotoxicity.",
                "Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy",
                "2024-01",
                "Ranjit Sabina, Wang Yao, Zhu Jingwen, Cheepala Satish B, Schuetz Erin G, Cho Woo Jung, Xu Beisi, Robinson Camenzind G, Wu Gang, Naren Anjaparavanda P, Schuetz John D",
                "protein_xref_pubmed",
                "37988981",
                "protein_xref_refseq",
                "NP_001098985"
            ],
            [
                "P20941-1",
                "Phosducin rs12402521 polymorphism predicts development of hypertension in young subjects with overweight or obesity.",
                "Nutrition, metabolism, and cardiovascular diseases : NMCD",
                "2013 Apr",
                "Palatini P, Ceolotto G, Ragazzo F, Mos L, Santonastaso M, Zanata G, Saladini F, Casiglia E",
                "protein_xref_pubmed",
                "22365573",
                "protein_xref_refseq",
                "NP_002588"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Citations (RefSeq)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-09-06T14:06:38.983152\n\nModified on\n   - 2024-05-17T11:23:53.899Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Human Protein Citations (RefSeq) datasets contains Homo sapiens [taxid:9606] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: human_protein_blacklisted_pmids_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/human_protein_blacklisted_pmids_uniprotkb.csv\n      Name: human_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_function_refseq.csv\n   Output Subdomain\n      Name: human_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_refseq.csv\n      Name: human_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"16078\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_citations_refseq.csv"
}