{
    "bcoid": "GLY_000244",
    "title": "Rat Proteome Masterlist (UniProtKB)",
    "description": "The Rat Proteome Master list dataset contains Rattus norvegicus [taxid:10116] UniProtKB canonical accessions ...",
    "filename_list": "rat_protein_masterlist.csv",
    "filename": "rat_protein_masterlist.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Canonical Accessions"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "others"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9Z214-1...",
                "reviewed..."
            ],
            [
                "Q9Z214-1...",
                "reviewed..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "status..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_name"
                },
                {
                    "type": "string",
                    "label": "reviewed_isoforms"
                },
                {
                    "type": "string",
                    "label": "unreviewed_isoforms"
                }
            ],
            [
                "Q9Z214-1",
                "reviewed",
                "Homer1",
                "Q9Z214-1",
                "A0A0H2UI35-1"
            ],
            [
                "Q9Z214-1",
                "reviewed",
                "Homer1",
                "Q9Z214-3",
                "A0A8I5ZMY0-1"
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteome Masterlist (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-09-06T14:06:38.971023\n\nModified on\n   - 2024-05-17T11:23:53.459Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Proteome Master list dataset contains Rattus norvegicus [taxid:10116] UniProtKB canonical accessions mapped to the reviewed (SwissProt) and unreviewed (TrEMBL) UniProtKB isoforms via gene grouping. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - canonical accessions\n   - gene name\n   - protein isoforms\n   - complete proteome\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB proteome data from the triplestore containing triples from nt file to map UniProtKB canonical accessions to reviewed and unreviewed isoforms via gene grouping. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_masterlist.csv\n      Name: rat_protein_masterlist.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_masterlist.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"21057\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_protein_masterlist.csv"
}