ID  9IL18C
TS  2026-05-07 16:07:37 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/glygen/protein.py", line 195, in post
LN      res_obj = protein_detail(req_obj, config_obj)
LN    File "/app/glygen/protein_apilib.py", line 346, in protein_detail
LN      history_obj_one = dbh["c_idtrack"].find_one(q_one)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/collection.py", line 1273, in find_one
LN      for result in cursor.limit(-1):
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1156, in next
LN      if len(self.__data) or self._refresh():
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1073, in _refresh
LN      self.__send_message(q)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 955, in __send_message
LN      address=self.__address)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1346, in _run_operation_with_response
LN      exhaust=exhaust)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1464, in _retryable_read
LN      return func(session, server, sock_info, slave_ok)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1340, in _cmd
LN      unpack_res)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/server.py", line 136, in run_operation_with_response
LN      _check_command_response(first)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/helpers.py", line 159, in _check_command_response
LN      raise OperationFailure(msg % errmsg, code, response)
LN  pymongo.errors.OperationFailure: Executor error during find command :: caused by :: operation was interrupted
//
ID  WQK1LU
TS  2026-05-07 16:08:52 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/glygen/protein.py", line 195, in post
LN      res_obj = protein_detail(req_obj, config_obj)
LN    File "/app/glygen/protein_apilib.py", line 355, in protein_detail
LN      history_obj_two = dbh["c_idtrack"].find_one(q_two)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/collection.py", line 1273, in find_one
LN      for result in cursor.limit(-1):
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1156, in next
LN      if len(self.__data) or self._refresh():
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1073, in _refresh
LN      self.__send_message(q)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 955, in __send_message
LN      address=self.__address)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1346, in _run_operation_with_response
LN      exhaust=exhaust)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1464, in _retryable_read
LN      return func(session, server, sock_info, slave_ok)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1340, in _cmd
LN      unpack_res)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/server.py", line 136, in run_operation_with_response
LN      _check_command_response(first)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/helpers.py", line 159, in _check_command_response
LN      raise OperationFailure(msg % errmsg, code, response)
LN  pymongo.errors.OperationFailure: Executor error during find command :: caused by :: all indexes on collection dropped
//
ID  J23NRD
TS  2026-05-07 16:13:53 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/glygen/pagination.py", line 54, in post
LN      res_obj = pagination_page(req_obj, config_obj)
LN    File "/app/glygen/pagination_apilib.py", line 78, in pagination_page
LN      r = filter_glyco_obj_list(table_id, doc["glycosylation"],query_obj["filters"],config_obj)
LN    File "/app/glygen/util.py", line 2109, in filter_glyco_obj_list
LN      update_res = update_filters(table_id, table_obj_list, filters_obj, 1, code_dict, filter_init)
LN    File "/app/glygen/util.py", line 1353, in update_filters
LN      record_id = record_obj["record_id"]
LN  KeyError: 'record_id'
//
ID  YSMOSK
TS  2026-05-07 16:07:39 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/glygen/protein.py", line 195, in post
LN      res_obj = protein_detail(req_obj, config_obj)
LN    File "/app/glygen/protein_apilib.py", line 355, in protein_detail
LN      history_obj_two = dbh["c_idtrack"].find_one(q_two)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/collection.py", line 1273, in find_one
LN      for result in cursor.limit(-1):
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1156, in next
LN      if len(self.__data) or self._refresh():
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1073, in _refresh
LN      self.__send_message(q)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 955, in __send_message
LN      address=self.__address)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1346, in _run_operation_with_response
LN      exhaust=exhaust)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1464, in _retryable_read
LN      return func(session, server, sock_info, slave_ok)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1340, in _cmd
LN      unpack_res)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/server.py", line 136, in run_operation_with_response
LN      _check_command_response(first)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/helpers.py", line 159, in _check_command_response
LN      raise OperationFailure(msg % errmsg, code, response)
LN  pymongo.errors.OperationFailure: Executor error during find command :: caused by :: operation was interrupted
//
ID  KDTBZ6
TS  2026-05-07 12:34:03 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/dsviewer/document.py", line 169, in get_many_text_search
LN      res_obj["recordlist"]  = list(mongo_dbh[coll_name].find(qry_obj,prj_obj).skip(offset).limit(limit))
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1156, in next
LN      if len(self.__data) or self._refresh():
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1073, in _refresh
LN      self.__send_message(q)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 955, in __send_message
LN      address=self.__address)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1346, in _run_operation_with_response
LN      exhaust=exhaust)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1464, in _retryable_read
LN      return func(session, server, sock_info, slave_ok)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1340, in _cmd
LN      unpack_res)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/server.py", line 136, in run_operation_with_response
LN      _check_command_response(first)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/helpers.py", line 159, in _check_command_response
LN      raise OperationFailure(msg % errmsg, code, response)
LN  pymongo.errors.OperationFailure: text index required for $text query (no such collection 'glydb.c_bco_v-2.11.1')
//