ID  ETPZJX
TS  2026-05-05 09:12:52 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/glygen/glycan.py", line 89, in post
LN      res_obj = glycan_search(req_obj, config_obj)
LN    File "/app/glygen/glycan_apilib.py", line 268, in glycan_search
LN      hit_dict, hit_stat, tmp_ts_list = get_hit_dict(dbh, sf_dict,field2sec,api_name, config_obj)
LN    File "/app/glygen/glycan_apilib.py", line 900, in get_hit_dict
LN      for obj in dbh[coll].find(mongo_query_single,prj_obj):
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1156, in next
LN      if len(self.__data) or self._refresh():
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 1073, in _refresh
LN      self.__send_message(q)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/cursor.py", line 955, in __send_message
LN      address=self.__address)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1346, in _run_operation_with_response
LN      exhaust=exhaust)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1464, in _retryable_read
LN      return func(session, server, sock_info, slave_ok)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/mongo_client.py", line 1340, in _cmd
LN      unpack_res)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/server.py", line 136, in run_operation_with_response
LN      _check_command_response(first)
LN    File "/usr/local/lib/python3.6/site-packages/pymongo/helpers.py", line 159, in _check_command_response
LN      raise OperationFailure(msg % errmsg, code, response)
LN  pymongo.errors.OperationFailure: unknown top level operator: $OR
//
ID  HLE1Q5
TS  2026-05-05 12:31:41 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/glygen/pagination.py", line 54, in post
LN      res_obj = pagination_page(req_obj, config_obj)
LN    File "/app/glygen/pagination_apilib.py", line 78, in pagination_page
LN      r = filter_glyco_obj_list(table_id, doc["glycosylation"],query_obj["filters"],config_obj)
LN    File "/app/glygen/util.py", line 2105, in filter_glyco_obj_list
LN      update_res = update_filters(table_id, table_obj_list, filters_obj, 1, code_dict, filter_init)
LN    File "/app/glygen/util.py", line 1352, in update_filters
LN      record_id = record_obj["record_id"]
LN  KeyError: 'record_id'
//
ID  B1JWRC
TS  2026-05-05 13:51:37 EDT-0400
LN  Traceback (most recent call last):
LN    File "/app/glygen/protein.py", line 91, in post
LN      res_obj = protein_search(req_obj, config_obj)
LN    File "/app/glygen/protein_apilib.py", line 193, in protein_search
LN      record_list = list(set(record_list).intersection(set(hit_dict[sf_list[i]])))
LN  KeyError: 'organism.name'
//